PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_36623_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 127aa    MW: 14247.5 Da    PI: 9.9226
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_36623_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001224123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         ++C++C + F ++  L  H++ H
  cra_locus_36623_iso_1_len_405_ver_3  2 FSCNYCRRKFYSSQALGGHQNAH 24
                                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.053229IPR007087Zinc finger, C2H2
SuperFamilySSF576676.8E-6229No hitNo description
PROSITE patternPS000280424IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
VFSCNYCRRK FYSSQALGGH QNAHKLERTL AKKSRELSSS VRPHAGHNNH HHRPAAGSSF  60
SGGGGQIHHM PQPTIYHGYR RFGNDVVGSY NGLENNHWNN NNNNKGYKSS ESVDEDFTGQ  120
LDLSLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798282.11e-27PREDICTED: zinc finger protein 2
RefseqXP_016441373.11e-27PREDICTED: zinc finger protein 2-like
SwissprotQ392663e-20ZFP7_ARATH; Zinc finger protein 7
TrEMBLA0A068U3258e-30A0A068U325_COFCA; Uncharacterized protein
STRINGVIT_11s0052g01120.t017e-27(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128